Protein Preparation

The Protein Preparation Workflow allows you to take a protein from its raw state, (which may be missing hydrogen atoms and have incorrect bond order assignments, charge states, or orientations of various groups) to a state in which it is properly prepared for calculations using Schrödinger products such as Glide, Prime, BioLuminate, Desmond, FEP+, QSite, and MacroModel.

Panel Help
User Manual
Command Reference