glide Command Help

Command: $SCHRODINGER/glide

usage: glide_startup.py [options] <input_file>

positional arguments:
  input_file

options:
  -v, -version          Show the program's version and exit.
  -h, -help             Show this help message and exit.
  -k, -keywords         Print full list of available keywords.
  -docking-keywords     Print list of keywords available for docking jobs.
  -gridgen-keywords     Print list of keywords available for gridgen jobs.
  -allow_missing_inputs
                        Launch the job even if some of the input files are
                        missing (the job will fail unless the file is already
                        available on the remote host).
  -adjust               Determine subjob size automatically.
  -OVERWRITE            Remove previous job files before running.
  -safe_restart         Restart failed subjobs from scratch instead of trying
                        to resume them where they left off. (Only applies to
                        distributed jobs.)
  -new                  Run new Glide backend
  -sublocal, -SUBLOCAL  Run subjobs with -LOCAL.
  -strict               Terminate upon first subjob failure.
  -noforce              Don't merge output poses if any subjobs fail.
  -no_cleanup           Don't remove temporary and subjob files.
  -aggressive_cleanup   Remove temporary and subjob files when the subjob is
                        done.
  -max_retries MAX_RETRIES
                        Number of times to re-submit subjobs upon failure.
  -nosmartdist          Disable smart job distribution.
  -nosplit              Do not split the input ligands file; instead all
                        subjobs will reference the same file but use different
                        sections of it.
  -mq                   Launch docking jobs with ZMQ.Use this flag with -NJOBS
                        to set the number of workers.

Job Control Options:
  -HOST <hostname>      Run job remotely on the indicated host entry.
  -WAIT                 Do not return a prompt until the job completes.
  -LOCAL                Do not use a temporary directory for job files. Keep
                        files in the current directory.
  -NOLOCAL              Use a temporary directory for job files.
  -D, -DEBUG            Show details of Job Control operation.
  -SAVE                 Return zip archive of job directory at job completion.
  -NOJOBID              Run the job directly, without Job Control layer.
  -JOBNAME JOBNAME      Provide an explicit name for the job.

Standard Options:
  -NJOBS NJOBS          Divide the overall job into NJOBS subjobs.
  -NSTRUCTS NSTRUCTS    Divide the overall job into subjobs with no more than
                        NSTRUCTS structures.
  -DRIVERHOST <hostname>
                        Run the driver on the specified host. The subjobs are
                        run on the hosts specified with -HOST.
  -RESTART              Restart a previously failed job, utilizing any already
                        completed subjobs.