phase_database Command Help

Command: $SCHRODINGER/phase_database

usage: phase_database [-h] <path>.phdb <task> ...

Phase 3D database creation and management tool.

Copyright Schrodinger LLC, All Rights Reserved.

positional arguments:
  <path>.phdb  Database name, including absolute path. The path must exist on
               the host where the job will run and on all compute nodes of
               that host.
               ---------------------------------------------------------------
  <task>       The task to perform. Write permissions to the database are
               required for import, splice, revise, index, extract, delete,
               convert and prefer. Use phase_database -help_<task> for
               detailed help on a specific task. Use -help_examples to display
               example commands.
    import     Import structures into a new or existing database.
    splice     Perform parallel import into a new or existing database by
               creating a number of small databases on separate CPUs, and then
               rapidly joining them head-to-tail.
    revise     Add pharmacophore sites, conformers, fingerprints or
               properties.
    index      Manage alternate 2D/3D database indices which speed up screens
               with hypotheses created from customized feature definitions.
    extract    Extract all properties into a single SQLite table within the
               database.
    query      Perform a property, substructure or similarity query.
    delete     Delete records.
    convert    Convert/merge one database into another.
    export     Export database records to structure files.
    subset     Create/operate on database subsets.
    prefer     Manage preferences that will be utilized by other software
               which accesses the database.

options:
  -h, --help   Show this message and exit.