protein_patch_calculation.py Command Help

Command: $SCHRODINGER/run -FROM psp protein_patch_calculation.py

usage: 
$SCHRODINGER/run -FROM psp protein_patch_calculation.py <struct_file> [<options>]

positional arguments:
  ctfile                name of the structure input file.

options:
  -h, --help            show this help message and exit
  -psHyd PSHYD, -patch_size_hyd PSHYD
                        minimum hydrophobic patch size
  -psPos PSPOS, -patch_size_pos PSPOS
                        minimum positive patch size
  -psNeg PSNEG, -patch_size_neg PSNEG
                        minimum negative patch size
  -v                    show program's version number and exit
  -jobname JOBNAME, -JOBNAME JOBNAME, -j JOBNAME
                        Set the base name of outputs

Job Control Options:
  -HOST <hostname>      Run job remotely on the indicated host entry.
  -WAIT                 Do not return a prompt until the job completes.
  -D, -DEBUG            Show details of Job Control operation.
  -NOJOBID              Run the job directly, without Job Control layer.

Standard Options:
  -NOLAUNCH             Set up subjob inputs, but don't run the jobs.