reactive_protein_residues.py Command Help

Command: $SCHRODINGER/run reactive_protein_residues.py

usage: reactive_protein_residues.py [-h]
                                    [-custom_pattern_file CUSTOM_PATTERN_FILE]
                                    infile outfile

The driver script to identify reactive protein residues, such as deamidation,
oxidation, glycosylation and proteolysis site. The results are written to a
CSV file.

positional arguments:
  infile                The input structure file
  outfile               The output CSV file.

options:
  -h, --help            show this help message and exit
  -custom_pattern_file CUSTOM_PATTERN_FILE
                        A PROSITE pattern syntax file containing definitions
                        of additional reactive residues. By deafult, the pre-
                        defined residues for deamidation, oxidation,
                        glycosylation, and proteolysis will be used.