rebuild_cms.py Command Help

Command: $SCHRODINGER/run rebuild_cms.py

Usage: 
  $SCHRODINGER/run rebuild_cms.py [options] <mae_file> <out_cms_file>

Description:
Script to rebuild a cms from a input structure file

Example to make a cms file by reformating input CTs as component CTs:
  rebuild_cms.py -make_comp_ct input_mae_file output_cms

Example to make a cms file by creating a new full_system CT from component CTs
  rebuild_cms.py -make_full_ct input_cms_file output_cms


 Script to rebuild a cms from a input structure file  Copyright Schrodinger
Inc., All rights reserved.

Options:
  -v, -version          Show the program's version and exit.
  -h, -help             Show this help message and exit.
  -make_comp_ct         Make component CTs
  -make_full_ct         make full_system ct
  -membrane_asl MEMBRANE_ASL
                        ASL for specifying membrane molecules
  -solvent_asl SOLVENT_ASL
                        ASL for specifying solvent molecules.
  -cosolvent_asl COSOLVENT_ASL
                        ASL for specifying co-solvents molecules. Co-solvent
                        molecules are not 'glued' and hence can freely diffuse
                        around the solute without affecting its wrapping.
  -force_field FORCE_FIELD
                        OPLS_2005 or S-OPLS
  -debug                Keep up intermediate files, and run multisim in -DEBUG
                        mode.