surfactant_tilt_driver.py Command Help

Command: $SCHRODINGER/run surfactant_tilt_gui_dir/surfactant_tilt_driver.py

usage: $SCHRODINGER/run surfactant_tilt_gui_dir/surfactant_tilt_driver.py
       [-h] -cms_file CMS_FILE -trj TRJ [-trj_min TRJ_MIN] [-trj_max TRJ_MAX]
       [-trj_step TRJ_STEP] -normal NORMAL -tail TAIL -head HEAD
       [-sel_type {formula,mol,chiral_mol,poly_mol,poly_chiral_mol,formula_res,res,chiral_res}]
       [-HOST <hostname>] [-D] [-SAVE] [-VIEWNAME <viewname>]
       [-JOBNAME JOBNAME]

Script to calculate structure factor from trajectory Copyright Schrodinger,
LLC. All rights reserved.

options:
  -h, -help             Show this help message and exit.
  -cms_file CMS_FILE    Input cms file (default: None)
  -trj TRJ              Directory of the trajectory (default: None)
  -trj_min TRJ_MIN      Minimum of trajectory frame to be analysed. (default:
                        None)
  -trj_max TRJ_MAX      Maximum of trajectory frame to be analysed. (default:
                        None)
  -trj_step TRJ_STEP    Use every n-th frame in the trajectory range. The
                        first and last frames in the range will always be
                        included. (default: None)
  -normal NORMAL        Normal vector of the plane. For example for XY plane
                        argument will be 0,0,1 (default: None)
  -tail TAIL            List of tail (hydrophilic) atom indexes of a molecule.
                        Equivalent atoms from other molecules will be used to
                        calculate the vector. (default: None)
  -head HEAD            List of head (hydrophobic) atom indexes of a molecule.
                        Equivalent atoms from other molecules will be used to
                        calculate the vector. (default: None)
  -sel_type {formula,mol,chiral_mol,poly_mol,poly_chiral_mol,formula_res,res,chiral_res}
                        Type of grouping to be done for passed to select the
                        surfactant type. (default: formula)

Job Control Options:
  -HOST <hostname>      Run job remotely on the indicated host entry.
                        (default: localhost)
  -D, -DEBUG            Show details of Job Control operation. (default:
                        False)
  -SAVE                 Return zip archive of job directory at job completion.
                        (default: False)
  -VIEWNAME <viewname>  Specifies viewname used in job filtering in maestro.
                        (default: False)
  -JOBNAME JOBNAME      Provide an explicit name for the job. (default: None)