trajectory_density_analysis_driver.py Command Help

Command: $SCHRODINGER/run trajectory_density_analysis_gui_dir/trajectory_density_analysis_driver.py

usage: $SCHRODINGER/run trajectory_density_analysis_gui_dir/trajectory_density_analysis_driver.py
       [-h] -cms_file CMS_FILE -trj TRJ [-trj_min TRJ_MIN] [-trj_max TRJ_MAX]
       [-trj_step TRJ_STEP] [-asl ASL] [-name NAME] [-center_asl CENTER_ASL]
       [-resolution RESOLUTION] [-isosurf ISOSURF] [-HOST <hostname>] [-D]
       [-VIEWNAME <viewname>] [-JOBNAME JOBNAME]

Script to calculate density profile in a trajectory Copyright Schrodinger,
LLC. All rights reserved.

options:
  -h, -help             Show this help message and exit.
  -cms_file CMS_FILE    Input cms file (default: None)
  -trj TRJ              Directory of the trajectory (default: None)
  -trj_min TRJ_MIN      Minimum of trajectory frame to be analysed. (default:
                        None)
  -trj_max TRJ_MAX      Maximum of trajectory frame to be analysed. (default:
                        None)
  -trj_step TRJ_STEP    Use every n-th frame in the trajectory range. The
                        first and last frames in the range will always be
                        included. (default: None)
  -asl ASL              ASL of the selection for which density has to be
                        calculated. (default: None)
  -name NAME            Name associated with each ASL selection. If no names
                        are passed then ASL selection string is considered to
                        be the name. The number of names should be equal to
                        number of ASL selections.for which density has to be
                        calculated. (default: None)
  -center_asl CENTER_ASL
                        Center the trajectory to this ASL. If not provided
                        trajectory will not be centered to any atom. (default:
                        None)
  -resolution RESOLUTION
                        Custom slice thickness. If not specified the best bin
                        width will be selected for the atom selection with
                        smallest number of atoms. (default: None)
  -isosurf ISOSURF      Calculate density isosurface. (default: False)

Job Control Options:
  -HOST <hostname>      Run job remotely on the indicated host entry.
                        (default: localhost)
  -D, -DEBUG            Show details of Job Control operation. (default:
                        False)
  -VIEWNAME <viewname>  Specifies viewname used in job filtering in maestro.
                        (default: False)
  -JOBNAME JOBNAME      Provide an explicit name for the job. (default: None)