update_BLASTDB Command Help

Command: $SCHRODINGER/utilities/update_BLASTDB

usage: update_BLASTDB script will update your local copy of the BLAST database for use
with Prime by downloading the 'pdb','nr' and 'cdd_delta'
(required by DeltaBlast) database files from the Schrodinger
server via RSYNC or HTTPS.

Note that the update process will require a substantial amount of
free diskspace. We recommend having 512 GB available.
A check that the precise amount of disk space needed is
free will also be done before starting the update process.

options:
  -h, --help            show this help message and exit
  -blast_dir BLAST_DIR, -d BLAST_DIR
                        path containing blast data files
  -https, -f            use HTTPS instead of rsync (default on Windows)
  -rsync_port RSYNC_PORT, -p RSYNC_PORT
                        rsync port to use ( default is 80)
  -rsync_server RSYNC_SERVER
                        server to use for rsync. Default is
                        prime2.schrodinger.com
  -quiet, -q            run quietly (if using batch mode)
  -rsync, -r            use rsync to Schrodinger (default on Linux)
  -skip, -s             Skip archiving
  -keep, -k             Keep any archives created (default is False)
  -include_nr           Download/update the nr BLAST sequence database.
  -v                    show program's version number and exit
  -jobname JOBNAME, -JOBNAME JOBNAME, -j JOBNAME
                        Set the base name of outputs

Standard Options:
  -NOLAUNCH             Set up subjob inputs, but don't run the jobs.