Protein Interaction Analysis — Filter Interactions Dialog Box

Advanced Options Dialog Box Features

• Residue features section
  • Set n tabs
  • Chain options
  • Amino acid options
  • Radius: Interactions within text box
  • Residue numbers text box
  • Select link
• Interaction type section
  • H bonds option
  • Pi-pi stacking option
  • Salt bridges option
• Clear link
• Matches: n interactions text
• Cancel link

Residue features section

Filter the interactions list by chain, residue, amino acid, and interaction radius.

Set n tabs

Select Set 1 to set filtering criteria for Set 1, and Set 2 to set filtering criteria for Set 2. Filter selections are preserved when you switch tabs.

Chain options

List interactions involving the protein chains selected

Residue numbers text box

List interactions involving the residue numbers listed in the text box

Amino acid options

Select the type of residue to include in the interactions list. Choose Standard to select all 20 standard amino acids.

Select link

Click to select amino acids by the type of side chain, from Aromatic, Aliphatic, Polar, Charged, NonPolar, Tiny, Small.

Radius: Interactions within text box

List interactions that fall within the radius specified in the text box, in angstroms.

Interaction type section

Filter the interactions list by the type of interaction

H bonds option

List all interactions containing one or more hydrogen bonds

Pi-pi stacking option

List all pi-pi stacking interactions

Salt bridges option

List all interactions containing one or more salt bridges

Clear link

Clear all options currently selected in the dialog box.

Matches: n interactions text

Displays the number of interactions that meet the selected filtering criteria. Noneditable.

Cancel link

Close the dialog box without applying any filters.