Desmond

System Requirements

 

 

Supported Operating Systems

NOTE: Available on Linux only. See System Requirements for Linux.

Hardware Requirements

  Required Considerations
Driver

The driver (master job) must run for the complete duration of the job without being interrupted. This means the computing resource on which it runs cannot be a spot or preemptible cloud instance. These nodes can be pre-empted (terminated) and if that happens your whole job will be lost.

The -DRIVERHOST argument determines where the driver runs. Select a host entry that is for an on-demand (i.e. not preemptible) node type.

If sufficient licenses and computational resources are available to run multiple Active Learning Glide jobs simultaneously, it is recommended to configure the driver host entry so that it requests an entire node, to avoid multiple drivers potentially using the same node and scratch filesystem, and thereby doubling (or more) the space requirement.

Processor (CPU)

x86_64 compatible processor

For large jobs, computing on a cluster with a queueing system is recommended, with the following hardware components:

  • A highly capable file server for the external network.

  • Shared storage for the intra-cluster network, to reduce traffic to and from the external network.

  • Fast processors, large memory, and high-quality motherboards and network interfaces, especially on the management nodes.

System memory (RAM)

64 GB memory for the entire node

RAM is not related to the input file size, only the disk space is related.
Disk space

The amount of scratch space required on the DRIVERHOST is relative to the size of the input ligand file. See example below.

 


GPGPU Requirements

(General-purpose computing on graphics processing units)

We support the following NVIDIA solutions:

Architecture Server / HPC Workstation
Pascal

Tesla P40

Tesla P100

Quadro P5000
Volta

Tesla V100

 

Turing

Tesla T4

Quadro RTX 5000

Ampere

A100

RTX A4000

RTX A5000

Ada Lovelace

L4

RTX 4000 SFF Ada

RTX 2000 Ada

Hopper

H100

 

Blackwell

B200 (SXM)

RTX PRO 6000 Blackwell Workstation
RTX PRO 4000 Blackwell SFF

Unless otherwise specified, we only support and test on the PCIe variant of the cards listed above.

 

To check the compute capability of NVIDIA cards, see NVIDIA CUDA GPU Compute Capability.

Supported Linux drivers

  • We support only the NVIDIA recommended / certified / production branch' Linux drivers for these cards with minimum CUDA version 12.0. Download from NVIDIA's Drivers webpage.

Supported Multi-Instance GPU (MIG)

Pre-configured Schrödinger compatible GPU boxes

  • For information on pre-configured Schrödinger compatible GPU boxes see this article.

Notes

  • Standard support does not cover consumer-level GPU cards such as GeForce GTX cards. Learn more about our rigorous validation process and why we exclusively support professional-grade NVIDIA hardware in this article.
  • If you already have another NVIDIA GPGPU and would like to know if we have experience with it, please contact our support at help@schrodinger.com.